This page contains recordings and video demonstrations from the ‘Introduction to GRC Data Analysis and Genetic Epidemiology Mapping’ workshop held at Pullman King Power hotel, Bangkok, on 8 – 9th May 2023

Contents

• Installations and Pre-workshop preparation
• Workshop Materials
• 📺 Workshop Recordings
• Welcome to the workshop
• Context: GenRe-Mekong project
• Module 1 - Exploring the GRC data using Microsoft Excel
• Module 2 - Genetic Epidemiology Mapping using grcMalaria R package
• Module 3 - Strain Tracking Analysis

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✨ Press here to see Highlights from the 2023’s workshop

Installations and Pre-workshop preparation

👉🏽 Visit this page for installation instructions

Workshop Materials

1. Training dataset (600 samples)
Pf-GenRe-GRCv1.2-workshop-training.xlsx453.5KB
2. R notebook containing analysis codes and information
Intro-grcMalaria-Analysis.zip7.4KB

📺 Workshop Recordings

📝 Module Outline:

Module 1 - Exploring the GRC data using Microsoft Excel

• How to explore data using Sort & Filter
• How to summarise data using Pivot Table

Module 2 - Genetic Epidemiology Mapping using grcMalaria R package

• Introduction to grcMalaria R package. Understanding how to initialise the software
• How to produce & read:
• sample count maps
• drug-resistance maps
• allele proportion maps
• time sequence maps

Module 3 - Genetic Epidemiology Mapping using grcMalaria R package

• Background: What is a “strain” and how to track strain
• How to cluster similar samples and track their prevalence
• How to connect cluster information to the GRC